Workflows
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Query
Created At
Updated At
Tool
FastQC45
MultiQC29
SAMtools24
SCANPY20
Cutadapt17
QUAST16
Bowtie 214
BWA14
ggplot214
BEDTools13
BUSCO13
fastp13
scikit-learn13
Bandage12
JBrowse12
mothur11
MaxQuant10
Minimap210
BamTools9
DeepTools9
DropletUtils9
FreeBayes9
kraken29
msConvert9
BCFtools8
NanoPlot8
seqtk8
Trimmomatic8
Flye7
HISAT27
MACS7
STAR7
taxonomy_krona_chart7
BLAST6
FeatureCounts6
Open Babel6
RSeQC6
Trim Galore6
Unipept6
UniProt6
COMBAT-TB Workbench5
DESeq25
Galactic Circos5
GEMINI5
gffread5
Merqury5
Prokka5
Salmon5
StringTie5
Unicycler5
annotatemyids4
Bwa-mem24
bx-python4
epiScanpy4
Galaxy Image Analysis4
GenomeScope 2.04
gffcompare4
KrakenTools4
MEGAHIT4
metaQuantome4
MSstatsTMT4
MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
pyGenomeTracks4
snippy4
SRA Software Toolkit4
Stacks4
Biopython3
Bracken3
Cardinal3
Clustal 2 (Clustal W, Clustal X)3
GOseq3
Gromacs3
HUMAnN23
InterProScan (EBI)3
MetaPhlAn3
MSstats3
Newick Utilities3
Racon3
scikit-image3
tb-profiler3
Bakta2
bed to protein map2
Bio3D2
BioRuby2
CellProfiler2
ChEMBL2
chemfp2
compute_sequence_length2
cshl_fastx_reverse_complement2
customProDB2
Diamond2
diaPASEF2
eggNOG-mapper v22
FastTree2
FlashLFQ2
funannotate2
gfastats2
GOEnrichment2
humann2
limma2
lofreq2
MAFFT2
MAKER2
MDAnalysis2
Medaka2
MetaNovo2
metaspades2
mzToSQLite2
NGSUtils2
The Protein Data Bank (PDB)2
pilon2
purge_dups2
QIIME2
R2
RAxML2
RDKit2
Recentrifuge2
RepeatMasker2
SALSA2
SeqCode2
snpEff2
staramr2
tbl2gff32
UMI-tools2
Vcflib2
WoLF PSORT2
Workflow4Metabolomics2
xcms2
ABRicate1
AmberTools1
antiSMASH1
Apollo1
AUGUSTUS1
blockbuster1
Bowtie1
ChemicalToolbox1
ChIPpeakAnno1
ChiRA1
Circos1
Clair31
clusterProfiler1
dada21
EGA1
EGSEA1
European Nucleotide Archive (ENA)1
ewastools1
export2graphlan1
FASTX-Toolkit1
FEELnc1
fgsea1
Filtlong1
FREEC1
GAEVAL1
Galaxy1
GATK1
GECKO1
g:Profiler1
GraPhlAn1
Heinz1
Helixer1
HiCExplorer1
Integron Finder1
iqtree1
ISEScan1
IsoformSwitchAnalyzeR1
IWTomics1
Krona1
LASTZ1
lotus21
MAGeCK1
MALDIquant1
Matchms1
MEME1
MethylDackel1
miniasm1
miRDeep21
NCBI Resources1
Nextflow1
OBITools1
OMArk1
pangolin1
pathview1
Peakachu1
PfamScan1
phyloseq1
PlasFlow1
PlasmidFinder1
Polypolish1
Prodigal1
Proteinortho1
PYLFIRE1
pymethylprocess1
QualiMap1
RAMClustR1
RapidNJ1
RCAS1
RED1
RIAssigner1
rnaQUAST1
scater1
shovill1
Smudgeplots1
SNAP1
SortMeRNA1
SPAdes1
SuCOS1
Targetfinder.org1
TransDecoder1
TRANSIT1
Trinity1
Trinotate1
VarScan1
VelvetOptimiser1
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Workflow type
Galaxy393
Nextflow100
Common Workflow Language32
COMPSs23
Snakemake5
Jupyter1
KNIME1
My type1
Taverna1
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Tag
GTN304
Galaxy303
Proteomics51
Transcriptomics34
assembly26
nf-core22
covid-1920
ecology18
microbiome17
genome-annotation16
statistics14
variant-analysis14
name:transcriptomics12
single-cell12
name:singlecell11
computational-chemistry10
covid19.galaxyproject.org10
epigenetics10
metagenomics10
Name:clinicalmp10
name:training10
evolution9
introduction9
LG-WF9
ml9
galaxy-interface8
imaging7
cancer6
genome-assembly6
rna6
rna-seq6
SARS-CoV-26
UX6
variant-calling6
ARTIC5
climate5
Metabolomics5
Name:collection5
Name:iwc5
Name:microgalaxy5
Name:pathogfair5
pediatric5
sequence-analysis5
visualisation5
Cheminformatics4
earth-system4
HiFi4
name:BY-COVID4
name:scRNA-seq4
name:single-cell4
Ocean4
synthetic-biology4
10x-genomics3
10xgenomics3
adna3
annotation3
cat3
dna3
fastq3
genome_assembly3
hifiasm3
name:trajectory_analysis3
nanopore3
ONT3
Pangeo3
test3
10x2
16s2
amplicon-sequencing2
ancientdna2
atac-seq2
binning2
bisulfite-sequencing2
CellProfiler2
chip2
chip-seq2
chromatin-accessibiity2
chromatin-immunoprecipitation2
classification2
contributing2
cosifer2
covid192
crispr2
denovo-assembly2
dna-methylation2
GC-MS2
hla2
hla-typing2
illumina2
image-processing2
immunology2
long-read-sequencing2
macs22
Marineomics2
methyl-seq2
microgalaxy2
name:data-management2
nanopore-sequencing2
optitype2
PacBio2
pathogen-genomics2
peak-calling2
personalized-medicine2
population-genetics2
rrna2
spatial2
vgp2
18s1
alevin1
alignment1
amplicon1
ancient-dna1
ancient-dna-analysis1
arabidopsis1
asaim1
ATACseq1
b-cell1
bacterial-genomes1
big-data1
Bioinformatics1
bustools1
cage1
cage-seq1
cageseq-data1
cellranger1
clinical1
clustering1
community-detection1
consensus1
copernicus1
coprolite1
covd-191
crispr-analysis1
crispr-cas1
crispr-cas91
cutandrun1
cutandrun-seq1
cutandtag1
cutandtag-seq1
data-independent-proteomics1
deep-variant1
deeplearning1
denovo1
dia-proteomics1
edna1
em-seq1
emergen_validated1
epigenome1
epigenomics1
example1
Exposomics1
Expospomics1
fish1
fnn1
Fungi1
fusion1
fusion-genes1
gatk41
gene-expression1
gene-fusion1
genome1
Genomics1
geosciences1
google1
guide-seq1
hCNV1
hybrid-assembly1
Imagerecognition1
immcantation1
immune1
introductions1
iontorrent1
Isoseq1
its1
iwc1
iwtomics1
k-mer1
kallisto1
kmer1
kmer-counting1
kmer-frequency-count1
linked-reads1
Lotus21
Ludwig1
mass-spectrometry1
MaxQuant1
metabarcoding1
metagenomes1
microscopy1
MIRACUM1
mirna1
Mito-flash1
Mitochondrion_tracking1
Mnist1
molecularcartography1
moleculardynamics1
name:circos1
name:deconvolution1
Name:erga1
name:GTN1
Name:nanopore1
name:single_cell1
name:viz1
networks1
ngs1
ngs-pipeline1
NormalyzerDE1
oxford-nanopore1
Pathogen1
pbat1
peptides1
PubMed1
PubTator1
purge_dups1
Qcxms1
qiime1
qiime21
Referencegenome1
regression1
RetroPath1
reverse1
Reviewed1
rnaseq1
rrbs1
samtools1
Scatac-seq1
screening1
SDRF1
segmentation1
sempi31
shotgun-ms1
small-rna1
smrna-seq1
spatial-transcriptomics1
st1
star-solo1
supernova1
taxonomic-classification1
taxonomic-profiling1
text-mining1
Tuberculosis1
umi1
umis1
unique-molecular-identifier1
variant-annotation1
Vgp_curated1
viral1
virus1
visium1
worflow1
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Submitter
Helena Rasche347
WorkflowHub Sandbox Bot72
Finn Bacall53
Raül Sirvent20
Stian Soiland-Reyes15
Laura Rodriguez-Navas12
Simone Leo10
Jane Doe10
Ignacio Eguinoa8
Douglas Lowe6
Stuart Owen3
Bert Droesbeke3
Johan Gustafsson3
Robin Long2
Kiran K Telukunta1
Kaushik Ghose1
Hervé Ménager1
Alban Gaignard1
Luca Pireddu1
JEAN-MARIE BUREL1
Kim Philipp Jablonski1
Alexandra Has1
Paolo Uva1
Nandan Deshpande1
Terry Bertozzi1
Eli Chadwick1
yi.sun@embl.de1
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Team
Galaxy Training Network347
nf-core89
Testing56
VIB-ELIXIR-BE12
Workflow Hub Administration11
MGnify9
LifeMonitorDev9
Galaxy COVID-198
iPC: individualizedPaediatricCure5
Australian BioCommons Dev5
IWC Workflows4
Demonstrator #73
test3
My team3
UX study leave2
UX study koehorst2
Seven Bridges Open Workflows1
V-pipe1
Team11
ux study team1
UXStudy1
Testing_proteomics1
IGG-Bioinfo1
Eli's test team1
EMBL Bioimage analysis service1
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Space
General440
577
Workflows visible to you, out of a total of 682
Visualisation with Circos
Work-in-progress
my-example-workflow
An example workflow repository.
workflow-test-fixture
A workflow and associated files for use in SEEK's tests :)
Hypermatrix size 2x2 blocks, block size 2x2 elements
Lysozyme in Water simplest version, from COMPSs Tutorial
Hypermatrix size 2x2 blocks, block size 2x2 elements
Hypermatrix size 2x2 blocks, block size 2x2 elements