Workflows
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Associated Tutorial
This workflows is part of the tutorial Evaluating Reference Data for Bulk RNA Deconvolution, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Workflow for the first half of the "Bulk RNA Deconvolution with MuSiC" tutorial.
Associated Tutorial
This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy ...
Workflow for the second half of the "Bulk RNA Deconvolution with MuSiC" tutorial.
Implements the "Estimation of cell type proportions with pre-grouping of cell types" section
Associated Tutorial
This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN
Features
- Includes [Galaxy Workflow ...
This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal
Associated Tutorial
This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN
Features
- Uses ...
This workflow creates bulk ESet objects from uploaded raw matrix & metadata files
Associated Tutorial
This workflows is part of the tutorial Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution, available in the GTN
Features
- Uses subworkflows ...
This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.
Associated Tutorial
This workflows is part of the tutorial Comparing inferred cell compositions using MuSiC deconvolution, ...