Workflows

What is a Workflow?
6 Workflows matching the given criteria: (Clear all filters)

Associated Tutorial

This workflows is part of the tutorial Evaluating Reference Data for Bulk RNA Deconvolution, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Workflow for the first half of the "Bulk RNA Deconvolution with MuSiC" tutorial.

Associated Tutorial

This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Workflow for the second half of the "Bulk RNA Deconvolution with MuSiC" tutorial.

Implements the "Estimation of cell type proportions with pre-grouping of cell types" section

Associated Tutorial

This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN

Features

  • Includes [Galaxy Workflow ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Features

  • Uses ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow creates bulk ESet objects from uploaded raw matrix & metadata files

Associated Tutorial

This workflows is part of the tutorial Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.

Associated Tutorial

This workflows is part of the tutorial Comparing inferred cell compositions using MuSiC deconvolution, ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Powered by
(v.1.17.0-main)
Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH