Workflows

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7 Workflows matching the given criteria: (Clear all filters)
Tool: gffread7
Comparison of two annotation tools: Helixer and Braker3

The idea of this workflow is to compare annotation with two annotation tools that differ in their approach and operation.

Associated Tutorial

This workflows is part of the tutorial Comparison of two annotation tools - Helixer and Braker3, available in the GTN

Features

  • Includes [Galaxy Workflow ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

GTN_differential_isoform_expression

Analyze differential isoform expression

Associated Tutorial

This workflows is part of the tutorial Genome-wide alternative splicing analysis, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Genome annotation with Maker (short)

Genome annotation with Maker (short)

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau

[![gtn star logo followed by the ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Genome annotation with Braker3

This workflow uses Braker3 to annotate a genome.

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Braker3, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Genome annotation with Maker

Genome annotation with Maker

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker, available in the GTN

Thanks to...

Workflow Author(s): Anthony Bretaudeau, French National Institute for Agriculture, Food, and Environment (INRAE)

Tutorial Author(s): [Anthony ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

annotation_helixer

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Helixer, available ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Associated Tutorial

This workflows is part of the tutorial Long non-coding RNAs (lncRNAs) annotation with FEELnc, available in the GTN

Thanks to...

Workflow Author(s): Stéphanie Robin

Tutorial Author(s): Stéphanie Robin ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

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