Workflow Type: Common Workflow Language
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Work-in-progress
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Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| inputReads | n/a | n/a |
|
| metadata | n/a | n/a |
|
| metadataSchema | n/a | n/a |
|
| subjects | n/a | n/a |
|
| exclude | n/a | n/a |
|
| bin_widths | n/a | width of each bin in basepairs along the graph vector |
|
| cells_per_file | n/a | Cells per file on component_segmentation |
|
Steps
| ID | Name | Description |
|---|---|---|
| relabel | n/a | n/a |
| dedup | n/a | n/a |
| overlapReads | n/a | n/a |
| induceGraph | n/a | n/a |
| buildGraph | n/a | n/a |
| vizGraph | n/a | n/a |
| odgi2rdf | n/a | n/a |
| mergeMetadata | n/a | n/a |
| bin_paths | n/a | n/a |
| index_paths | Create path index | n/a |
| segment_components | Run component segmentation | n/a |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| odgiGraph | n/a | n/a |
|
| odgiPNG | n/a | n/a |
|
| seqwishGFA | n/a | n/a |
|
| odgiRDF | n/a | n/a |
|
| readsMergeDedup | n/a | n/a |
|
| mergedMetadata | n/a | n/a |
|
| indexed_paths | n/a | n/a |
|
| colinear_components | n/a | n/a |
|
Version History
Version 1 (earliest) Created 7th Oct 2020 at 10:36 by Michael R. Crusoe
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Frozen
Version-1
c89b183
Creators and SubmitterCreators
Submitter
Discussion Channel
Citation
Soiland-Reyes, S., & Crusoe, M. R. (2022). COVID-19 PubSeq Pangenome Generate. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.63.1
License
Activity
Views: 4683 Downloads: 1804
Created: 7th Oct 2020 at 10:36
Last updated: 21st Sep 2022 at 10:26
AttributionsNone
View on GitHub
https://orcid.org/0000-0002-2961-9670