assembly-with-flye/main
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Workflow Type: Galaxy
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Tests Assemble long reads with Flye, then view assembly statistics and assembly graph
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input sequence reads | Input sequence reads | Sequence reads e.g. nanopore |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Flye: assembly | toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.6+galaxy0 |
| 2 | Quast genome report | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.3.0+galaxy1 |
| 3 | Fasta statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
| 4 | Bandage image: Flye assembly | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Flye assembly (consensus) | Flye assembly (consensus) | n/a |
|
| Flye assembly (assembly_graph) | Flye assembly (assembly_graph) | n/a |
|
| Flye assembly (Graphical Fragment Assembly) | Flye assembly (Graphical Fragment Assembly) | n/a |
|
| Flye assembly (assembly_info) | Flye assembly (assembly_info) | n/a |
|
| Quast: HTML report | Quast: HTML report | n/a |
|
| Flye assembly statistics | Flye assembly statistics | n/a |
|
| Bandage Image: Assembly Graph Image | Bandage Image: Assembly Graph Image | n/a |
|
Version History
v0.1 (earliest) Created 15th Feb 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.15a01eff
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Views: 6355 Downloads: 25996 Runs: 0
Created: 15th Feb 2024 at 03:01
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