Workflows

What is a Workflow?

4 Workflows matching the given criteria: (Clear all filters)

Tool:

CP_pipeline_IDR_training

Galaxy Training Network

Nucleoli segmentation and feature extraction using CellProfiler

Associated Tutorial

This workflows is part of the tutorial Nucleoli segmentation and feature extraction using CellProfiler, available in the GTN

Thanks to...

Tutorial Author(s): Beatriz Serrano-Solano, ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Created: 2nd Jun 2025 at 10:56

CP_object_tracking_example

Galaxy Training Network

example cellprofiler pipeline

Associated Tutorial

This workflows is part of the tutorial Object tracking using CellProfiler, available in the GTN

Thanks to...

Tutorial Author(s): Yi Sun, [Beatriz ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Created: 2nd Jun 2025 at 10:56

Nucleoli segmentation using CellProfiler (EOSC-Life D6)

IBISBA Workflows, Euro-BioImaging, EOSC-Life WP3

Stable

This workflow has been created as part of Demonstrator 6 of the project EOSC-Life (within WP3) and is focused on reusing publicly available RNAi screens to gain insights into the nucleolus biology. The workflow downloads images from the Image Data Resource (IDR), performs object segmentation (of nuclei and nucleoli) and feature extraction of the images and objects identified.

Tutorial: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/tutorial-CP/tutorial.html

Type: Galaxy

Creators: None

Submitter: Beatriz Serrano-Solano

Download