Workflows
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Query
Created At
Updated At
Tool
gffcompare4
FastQC39
MultiQC27
SAMtools23
anndata22
ggplot216
SCANPY15
Bowtie 214
Cutadapt14
fastp14
BWA13
scikit-learn13
Bandage12
JBrowse12
BEDTools11
BUSCO11
Minimap211
mothur11
QUAST11
BamTools9
BCFtools9
DeepTools9
FreeBayes9
kraken29
NanoPlot8
seqtk8
Trim Galore8
BLAST7
Galaxy Image Analysis7
MaxQuant7
msConvert7
STAR7
taxonomy_krona_chart7
Trimmomatic7
DESeq26
GEMINI6
gffread6
HISAT26
MACS6
MuSiC Deconvolution6
Open Babel6
scikit-image6
DropletUtils5
FeatureCounts5
Flye5
RSeQC5
SRA Software Toolkit5
StringTie5
Unicycler5
annotatemyids4
Biopython4
bx-python4
Galactic Circos4
GOseq4
KrakenTools4
MAFFT4
MEGAHIT4
Racon4
Salmon4
Stacks4
Unipept4
UniProt4
Bracken3
Bwa-mem23
Cardinal3
Clustal 2 (Clustal W, Clustal X)3
COMBAT-TB Workbench3
Falco3
GenomeScope 2.03
Gromacs3
HUMAnN23
InterProScan (EBI)3
Merqury3
MetaPhlAn3
MSstats3
MSstatsTMT3
Newick Utilities3
Prokka3
pyGenomeTracks3
R3
snippy3
UMI-tools3
Vcflib3
Bakta2
bed to protein map2
Bio3D2
CellProfiler2
ChEMBL2
chemfp2
compute_sequence_length2
cshl_fastx_reverse_complement2
customProDB2
Diamond2
EGA2
eggNOG-mapper v22
epiScanpy2
FastTree2
FASTX-Toolkit2
funannotate2
gfastats2
GOEnrichment2
humann2
limma2
lofreq2
MAKER2
MDAnalysis2
Medaka2
MEME2
MetaNovo2
metaQuantome2
metaspades2
miniasm2
NCBI Resources2
NGSUtils2
The Protein Data Bank (PDB)2
QIIME2
RDKit2
Recentrifuge2
RepeatMasker2
sceasy2
SeqCode2
Seurat2
SnapATAC2
snpEff2
staramr2
tb-profiler2
tbl2gff32
Workflow4Metabolomics2
xcms2
ABRicate1
AmberTools1
antiSMASH1
Apollo1
AUGUSTUS1
blockbuster1
Bowtie1
BRAKER31
ChemicalToolbox1
ChIPpeakAnno1
ChiRA1
Circos1
Clair31
clusterProfiler1
CNVkit1
CoverM1
dada21
diaPASEF1
edgeR1
EGSEA1
European Nucleotide Archive (ENA)1
ete1
ewastools1
export2graphlan1
FEELnc1
fgsea1
Filtlong1
FlashLFQ1
FREEC1
GAEVAL1
GECKO1
g:Profiler1
GraPhlAn1
Heinz1
Helixer1
HiCExplorer1
The Immune Epitope Database (IEDB)1
Integron Finder1
iqtree1
ISEScan1
IsoformSwitchAnalyzeR1
IWTomics1
kraken-biom1
Krona1
LASTZ1
lotus21
MAGeCK1
MALDIquant1
Matchms1
MethylDackel1
MFAssignR1
miRDeep21
multiGSEA1
mzToSQLite1
OBITools1
OMArk1
OptiType1
pangolin1
pathview1
Peakachu1
PfamScan1
phyloseq1
pilon1
PlasFlow1
PlasmidFinder1
Polypolish1
Prodigal1
Proteinortho1
PubMed1
purge_dups1
PyTorch1
QualiMap1
QuickTree1
RaceID1
RAMClustR1
RapidNJ1
RAxML1
RCAS1
RED1
RIAssigner1
rnaQUAST1
SALSA1
scater1
Seq2HLA1
shovill1
sinto1
Smudgeplots1
SNAP1
SortMeRNA1
SPAdes1
SuCOS1
Targetfinder.org1
TransDecoder1
TRANSIT1
trimAl1
Trinity1
Trinotate1
VarScan1
varVAMP1
VelvetOptimiser1
WoLF PSORT1
More...
Workflow type
Galaxy4
Submitter
GTN Bot4
Space
Galaxy4
Analyze differential isoform expression
Associated Tutorial
This workflows is part of the tutorial Genome-wide alternative splicing analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
De novo transcriptome reconstruction with RNA-Seq
Associated Tutorial
This workflows is part of the tutorial De novo transcriptome reconstruction with RNA-Seq, available in the GTN
Thanks to...
Tutorial Author(s): Mallory Freeberg, [Mo ...
Generating non-reference protein database for FragPipe discovery
Associated Tutorial
This workflows is part of the tutorial Neoantigen 2: Non-Reference-Database-Generation, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Proteogenomics 1: Database Creation, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Tutorial Author(s): [Subina ...
