Workflows

Starting from the BAM files produced by snippy, generate a table that summarizes the drug-resistance profile for each sample

Associated Tutorial

This workflows is part of the tutorial Identifying tuberculosis transmission links: from SNPs to transmission clusters, available in the GTN

Thanks to...

Tutorial Author(s): [Galo A. ...

Associated Tutorial

This workflows is part of the tutorial Evaluating Reference Data for Bulk RNA Deconvolution, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

CUT&RUN workflow used in GTN

Associated Tutorial

This workflows is part of the tutorial CUT&RUN data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you are using the separate preprocessing tools (NormalizeData, FindVariableFeatures, ScaleData).

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN

Features

• Includes [Galaxy Workflow ...

This Workflow takes a dataset collection of single-cell ATAC-seq fragments and performs:

• preprocessing
• filtering
• concatenation
• dimension reduction
• batch correction
• leiden clustering

Associated Tutorial

This workflows is part of the tutorial Multi-sample batch correction with Harmony and SnapATAC2, available in the GTN ...

Tree building for "Phylogenetics - Back to basics"

Associated Tutorial

This workflows is part of the tutorial Phylogenetics - Back to basics, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Helena ...

Associated Tutorial

This workflows is part of the tutorial Secondary metabolite discovery, available in the GTN

Thanks to...

Tutorial Author(s): Paul Zierep

[![gtn star logo followed by the word ...

Workflow for the first half of the "Bulk RNA Deconvolution with MuSiC" tutorial.

Associated Tutorial

This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy ...

Pseudobulk Analysis Workflow for Tutorial

Associated Tutorial

This workflows is part of the tutorial Pseudobulk Analysis with Decoupler and EdgeR, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you use SCTransform for preprocessing.

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN

Features

• Includes Galaxy Workflow Tests ...