Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
MultiQC19
SAMtools14
fastp11
BEDTools8
Cutadapt8
gfastats8
Bowtie 26
BUSCO6
BWA6
lofreq6
ggplot25
MACS5
Minimap25
snpEff5
Bandage4
BCFtools4
GenomeScope 2.04
iVar4
kraken24
Merqury4
QualiMap4
FastQC3
FASTX-Toolkit3
Gromacs3
taxonomy_krona_chart3
ToolDistillator3
AmberTools2
BamTools2
biomformat2
bx-python2
Cufflinks2
MAPseq2
MaxQuant2
Medaka2
Open Babel2
PRINSEQ2
purge_dups2
RDKit2
STAR2
Trimmomatic2
ABRicate1
ampvis1
anndata1
BLAST1
Bracken1
Bwa-mem21
ChemicalToolbox1
Clair31
Clustal 2 (Clustal W, Clustal X)1
cmsearch-deoverlap1
DESeq21
edgeR1
eggNOG-mapper v21
FastTree1
Flye1
FreeBayes1
gffread1
GOseq1
Helixer1
Infernal1
Integron Finder1
InterProScan (EBI)1
iqtree1
ISEScan1
JBrowse1
KrakenTools1
MAFFT1
MetaNovo1
msConvert1
MSstats1
NanoPlot1
Newick Utilities1
OMArk1
PlasmidFinder1
QUAST1
Recentrifuge1
SCANPY1
SeqCode1
seqtk1
shovill1
snipit1
SRA Software Toolkit1
StringTie1
SuCOS1
Unipept1
UniProt1
VAPOR1
Vcflib1
More...
Workflow type
Galaxy83
Tag
covid-195
covid19.galaxyproject.org5
ABRomics4
bacterial-genomics4
ChIP4
Genomics4
ARTIC2
fasta2
FASTQ2
GTN2
Metabolomics2
MS2
paired-end2
quality2
Reviewed2
RNASEQ2
vgp2
workflow4metabolomics2
#single-cell1
AMR1
AMR-detection1
Annotation1
antibiotic-resistance1
antimicrobial resistance1
antimicrobial-resistance-genes1
Assembly1
ATACseq1
BY-COVID1
CUTnRUN1
emergen_validated1
GC-MS1
generic1
genome-annotation1
Hi-C1
iwc1
LC-MS1
metaMS1
mpxv1
name:amplicon1
name:single-cell1
ONT1
pox1
taxonomy-assignment1
trimming1
Virology1
xcms1
More...
Submitter
WorkflowHub Bot83
Creator
Paul Zierep5
Peter van Heusden1
Pavankumar Videm1
Wolfgang Maier1
Wolfgang Maier1
Anthony Bretaudeau1
Anton Nekrutenko1
More...
83
Workflows visible to you, out of a total of 83
Tests COVID-19: variation analysis on ARTIC ONT data
This workflow for ONT-sequenced ARTIC data is modeled after the alignment/variant-calling steps of the ARTIC pipeline. It performs, essentially, the same steps as that pipeline’s minion command, i.e. read mapping with minimap2 and variant calling with medaka. Like the Illumina ARTIC workflow it uses ivar for primer trimming. Since ONT-sequenced reads have a much ...
DownloadCOVID-19: variation analysis on WGS SE data
This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.
COVID-19: variation analysis on WGS PE data
This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.
