Du Novo GTN Tutorial - Make Consensus Sequences
3.0

Workflow Type: Galaxy

Run this on raw duplex sequencing reads to produce duplex consensus sequences.

Associated Tutorial

This workflows is part of the tutorial Calling very rare variants, available in the GTN

Thanks to...

Tutorial Author(s): Anton Nekrutenko, Nick Stoler

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
SRR1799908_forward SRR1799908_forward n/a
  • File
SRR1799908_reverse SRR1799908_reverse n/a
  • File

Steps

ID Name Description
2 Du Novo: Make families toolshed.g2.bx.psu.edu/repos/nick/dunovo/make_families/2.15
3 Du Novo: Correct barcodes toolshed.g2.bx.psu.edu/repos/nick/dunovo/correct_barcodes/2.15
4 Du Novo: Align families toolshed.g2.bx.psu.edu/repos/nick/dunovo/align_families/2.15
5 Du Novo: Make consensus reads toolshed.g2.bx.psu.edu/repos/nick/dunovo/dunovo/2.15
6 DCS: Sequence Content Trimmer toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1
7 SSCS: Sequence Content Trimmer toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1

Outputs

ID Name Description Type
_anonymous_output_3 _anonymous_output_3 n/a
  • File
_anonymous_output_4 _anonymous_output_4 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File
n/a n/a n/a
  • File

Version History

3.0 (earliest) Created 2nd Jun 2025 at 11:03 by GTN Bot

Added/updated 4 files


Open master 7b879c9
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
Activity

Views: 46   Downloads: 4   Runs: 0

Created: 2nd Jun 2025 at 11:03

help Attributions

None

Total size: 72.4 KB
Powered by
(v.1.17.0-main)
Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH