Visualization Of RNA-Seq Results With Volcano Plot
1.0

Workflow Type: Galaxy

Visualization of RNA-Seq results with Volcano Plot

Associated Tutorial

This workflows is part of the tutorial Visualization of RNA-Seq results with Volcano Plot, available in the GTN

Features

Thanks to...

Workflow Author(s): Maria Doyle, Armin Dadras, Helena Rasche

Tutorial Author(s): Maria Doyle

Tutorial Contributor(s): Armin Dadras, Teresa Müller, Björn Grüning, Nicola Soranzo, Helena Rasche, Saskia Hiltemann

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
DE results #main/DE results Differentially expressed results file (genes in rows, and 4 required columns: raw P values, adjusted P values (FDR), log fold change and gene labels)
  • File
Volcano genes #main/Volcano genes Genes of interest file (list of genes to be plotted in volcano)
  • File

Steps

ID Name Description
2 Volcano plot highlighting significant toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.7
3 Volcano plot labelling top 10 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.7
4 Volcano plot labelling genes of interest toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.7

Outputs

ID Name Description Type
volcano_pdf #main/volcano_pdf n/a
  • File

Version History

1.0 (earliest) Created 2nd Jun 2025 at 11:05 by GTN Bot

Added/updated 4 files


Open master fc64de1
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
Activity

Views: 26   Downloads: 2   Runs: 0

Created: 2nd Jun 2025 at 11:05

help Attributions

None

Total size: 43.6 KB
Powered by
(v.1.17.0-main)
Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH