Workflows

Trajectory analysis using Monocle3, starting from 3 input files: expression matrix, gene and cell annotations

Associated Tutorial

This workflows is part of the tutorial Inferring single cell trajectories with Monocle3, available in the GTN

Thanks to...

Tutorial Author(s): [Julia ...

Associated Tutorial

This workflows is part of the tutorial GO Enrichment Analysis on Single-Cell RNA-Seq Data, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a Galaxy Workflow Report ...

Bacterial Genome Annotation

Associated Tutorial

This workflows is part of the tutorial Bacterial Genome Annotation, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Bérénice Batut, ...

End-to-End Tissue Microarray Analysis with Galaxy-ME

Associated Tutorial

This workflows is part of the tutorial End-to-End Tissue Microarray Image Analysis with Galaxy-ME, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks

...

Analyse HeLa fluorescence siRNA screen

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses ...

Associated Tutorial

This workflows is part of the tutorial Scanpy Parameter Iterator, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Julia Jakiela

Tutorial Author(s): [Julia ...

Single-cell quality control with scater

Associated Tutorial

This workflows is part of the tutorial Single-cell quality control with scater, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Till Korten, Leonid Kostrykin

Tutorial Author(s): ...

Associated Tutorial

This workflows is part of the tutorial Understanding Barcodes, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a Galaxy Workflow Report ...

Genome annotation with Maker

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker, available in the GTN

Thanks to...

Workflow Author(s): Anthony Bretaudeau, French National Institute for Agriculture, Food, and Environment (INRAE)

Tutorial Author(s): [Anthony ...