Heatmap2 Workflow
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Run on GalaxyVisualization of RNA-Seq results with heatmap2
Associated Tutorial
This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Maria Doyle
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| heatmap_genes | heatmap_genes | n/a |
|
| normalized_counts | normalized_counts | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Join two Datasets | join1 |
| 3 | Cut | Cut1 |
| 4 | Transpose | toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 |
| 5 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| heatmap_pdf | heatmap_pdf | n/a |
|
Version History
master
4.0
Creators and Submitter
Views: 2526 Downloads: 382 Runs: 2
Created: 2nd Jun 2025 at 11:06
Last updated: 1st Dec 2025 at 13:14
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Teams: Galaxy Training Network
Organizations: Galaxy
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