Workflows

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Workflow for the Galaxy Training Network tutorial "Hybrid genome assembly - Nanopore and Illumina"

Associated Tutorial

This workflows is part of the tutorial Hybrid genome assembly - Nanopore and Illumina, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Visualize and filter scATAC-seq anndata to produce a high quality count matrix

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell ATAC-seq Datasets, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

This workflow creates an count matrix anndata file given 10x scATAC-seq data.

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell ATAC-seq Datasets, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Text mining a museum collection in tabular format to extract from which year most objects derive and what they are.

Associated Tutorial

This workflows is part of the tutorial OpenRefine Tutorial for researching cultural data, available in the GTN

Features

• Includes [Galaxy Workflow ...

To perform Qualification, Nitrate Calibration, Validation of One Argo float or One Glider by using Neural Network and Climatology. Copy past before running and change calibration parametrization if necessary

Associated Tutorial

This workflows is part of the tutorial Nitrate DMQC for autonomous platforms such as Argo floats, available in the GTN ...

This workflow applies text mining to a museum collection in tabular format to extract from which year most objects derive and what they are. The first steps are filtering and data cleaning to put the data in correct format. Datamash allows showing how many documents from what year the museum catalogue contains. The output is a chronological table which is visualised as a bar chart. From that, the year where most items derived from is extracted. The next step filters items only from that year. The ...

This workflow shows Flexynesis usage for predicting survival markers from a multi-omics dataset

Associated Tutorial

This workflows is part of the tutorial Identifing Survival Markers of Brain tumor with Flexynesis, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

This WF applies Flexynesis on BRCA data from Metabric for a classification task

Associated Tutorial

This workflows is part of the tutorial Modeling Breast Cancer Subtypes with Flexynesis, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Classification and visualization of ITS regions.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report
• Uses ...