Workflows

What is a Workflow?
793 Workflows visible to you, out of a total of 868

Application that perform the multiplication between matrices.

Type: COMPSs

Creator: Nicolò Giacomini

Submitter: Nicolò Giacomini

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Type: Nextflow

Creators: charles-plessy , charles-plessy

Submitter: WorkflowHub Bot

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Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

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Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

Scaffolding using HiC data with YAHS.

Type: Galaxy

Creator: VGP, Galaxy

Submitter: WorkflowHub Bot

Assembly with Hifi reads and Trio Data

Generate phased assembly based on PacBio Hifi Reads using parental Illumina data for phasing

Inputs

  1. Hifi long reads [fastq]
  2. Concatenated Illumina reads : Paternal [fastq]
  3. Concatenated Illumina reads : Maternal [fastq]
  4. K-mer database [meryldb]
  5. Paternal hapmer database [meryldb]
  6. Maternal hapmer database [meryldb]
  7. Genome profile summary generated by Genomescope [txt]
  8. Genome model parameters generated by Genomescope [tabular]

...

Type: Galaxy

Creator: Galaxy, VGP

Submitter: WorkflowHub Bot

Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)

Type: Galaxy

Creator: Galaxy, VGP

Submitter: WorkflowHub Bot

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Type: Nextflow

Creator: Jonathan Manning

Submitter: WorkflowHub Bot

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Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

The MAPseq to Ampvis workflow processes MAPseq OTU tables and associated metadata for analysis in Ampvis2. This workflow involves reformatting MAPseq output datasets to produce structured output files suitable for Ampvis2.

Type: Galaxy

Creators: Rand Zoabi, Mara Besemer

Submitter: WorkflowHub Bot

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