Workflows

What is a Workflow?
844 Workflows visible to you, out of a total of 923
fluorescence-nuclei-segmentation-and-counting/main

This workflow performs segmentation and counting of cell nuclei using fluorescence microscopy images. The segmentation step is performed using Otsu thresholding (Otsu, 1979). The workflow is based on the tutorial: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/imaging-introduction/tutorial.html

Type: Galaxy

Creator: Leonid Kostrykin

Submitter: WorkflowHub Bot

flavivirushelicase_apo

This is a Galaxy workflow for performing molecular dynamics simulations and analysis with flavivirus helicases in the Apo or unbound state. The associated input files can be found at: https://zenodo.org/records/7493015 The associated output files can be found at: https://zenodo.org/records/7850935

Type: Galaxy

Creator: Bryan Raubenolt

Submitter: Bryan Raubenolt

DOI: 10.48546/workflowhub.workflow.762.1

coronavirushelicase_proteindrugcomplex

This is a Galaxy workflow for performing molecular dynamics simulations and analysis with coronavirus helicases bound to a ligand/drug molecule. The associated input files can be found at: https://zenodo.org/records/7492987. The associated output files can be found at: https://zenodo.org/records/7851000.

Type: Galaxy

Creator: Bryan Raubenolt

Submitter: Bryan Raubenolt

DOI: 10.48546/workflowhub.workflow.763.1

coronavirushelicase_apo

This is a Galaxy workflow for performing molecular dynamics simulations and analysis with coronavirus helicases in the Apo or unbound state. The associated input files can be found at: https://zenodo.org/records/7492987. The associated output files can be found at: https://zenodo.org/records/7851000.

Type: Galaxy

Creator: Bryan Raubenolt

Submitter: Bryan Raubenolt

DOI: 10.48546/workflowhub.workflow.764.1

flavivirushelicase_proteindrugcomplex

This is a Galaxy workflow for performing molecular dynamics simulations and analysis with flavivirus helicases bound to a ligand/drug molecule. The associated input files can be found at: https://zenodo.org/records/7493015 The associated output files can be found at: https://zenodo.org/records/7850935

Type: Galaxy

Creator: Bryan Raubenolt

Submitter: Bryan Raubenolt

DOI: 10.48546/workflowhub.workflow.761.1

Example Multi-Wavelength Light-Curve Analysis
Work-in-progress

Protype demonstrator of a workflow reducing HESS and INTEGRAL/SPI-ACS data to common Light Curve format and combining the lightcurves into a multi-wavelength observation.

Type: Galaxy

Creators: Volodymyr Savchenko, Denys Savchenko, Andrii Neronov

Submitter: Volodymyr Savchenko

Refining Genome Annotations with Apollo (prokaryotes)

Refining Genome Annotations with Apollo

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: Paul De Geest

Visualizing NDVI time-series data with HoloViz

NDVI data with OpenEO to time series visualisation with HoloViz

Type: Galaxy

Creator: Marie Jossé

Submitter: Paul De Geest

Calculating and visualizing OBIS marine biodiversity indicators

Calculating and visualizing marine biodiversity indicators

Type: Galaxy

Creator: Marie Josse

Submitter: Paul De Geest

Finding the Muon Stopping Site using PyMuonSuite

Finding potential muon stopping sites in crystalline copper

Type: Galaxy

Creators: Leandro Liborio, Muon Spectroscopy Computational Project

Submitter: Paul De Geest

Powered by
 (v.1.16.0)
About WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy | Cite us | Contact us
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH